We explain features of molecular dynamics AFM image simulator MD in this page.
Click the following word "MD" and you can jump to the web page explaining about calculation modes of the MD solver.

MD: molecular dynamics AFM image simulator

The features are ...

An AFM image is calculated by solving Newton's equations of motion for all atoms in molecules and predicting the change of the molecular structure..

It is possible to calculate a force curve by simulation.

It is possible to calculate an AFM image in the mode tip's height is constant.

It is also possible to simulate geometry optimizaton.

Polymers, soft matters, and organic compounds can be used as a sample.

Please look at the following link for the knowledge of how to make data of a tip and that of a sample.

SetModel, ChemSketch: software to create data of a tip and that of a sample


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