The geometrical mutual AFM simulator: GeoAFM


A simulation of the AFM image for a GroEL (chaperonin) with a tip whose shape is a cone (The chaperonin is a basket-shaped polymer of 140 angstrom width, 140 angstrome depth and 200 angstrom height. The AFM image reproduces a hole at the top of the basket-sahped polymer.)

A movie file that explains how to use the GeoAFM

A document that explains how to use the GeoAFM (an Excel file)

Structural data of the sample material in the pdb file format [The Protein Data Bank (http://www.rcsb.org/pdb/home/home.do) provides structural data of proteins with the pdb file format.]

A project file for carrying out the simulation [This is one of input data files for carrying out the simulation introduced in this web page with the GeoAFM. Its filename extension is ".pro".]

A screen for editing the project file Using this screen, you can edit the project file introduced in this web page.
To perform your own task which is slightly different from the simulation introduced in this web page, you can edit the project file and change input parameters.

If you have any questions about how to use the GeoAFM, please contact us by e-mail.
When you send an e-mail to us, a string of characters is put into a subject of the e-mail automatically.
This string tells us at which stage of the simulation you have a trouble.



Instead of sending the e-mail to us, you can give us any questions using the following form.

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If you want to consult with us about preparing the input files for simulations, our engineer can help you with consulting fee.
Would you like to request technical consultation from us with consulting fee?



If you want to let us perform simulations for you, our engineer can help you with charging a rate.
Would you like to request technical consultation from us with consulting fee?



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